Family GP000628


Family ID GP000628  add to my list RDF
Family name 12 oxophytodienoic acid reductase family   suggest a name
Synonym(s) 12 oxophytodienoate reductase
Cross-reference(s) PMID:
One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions.
12206759 PMID:
The TIM-barrel fold: a versatile framework for efficient enzymes.
11257493
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
12 oxophytodienoic acid reductase family
GP000628 (444)
2 GP015518 (444)
3 GP040182 (444)
4 GP069653 (444)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 444
Species Count (w/o splice) Count (w/ splice)
4 4
12 21
9 9
33 33
8 8
6 6
7 7
16 16
6 6
11 12
13 14
10 10
20 20
7 11
15 15
17 17
13 13
10 10
12 12
6 10
3 3
9 9
3 6
9 9
9 17
12 12
6 6
6 8
43 43
12 12
14 15
6 6
11 12
16 19
13 13


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
NADH:flavin oxidoreductase/NADH oxidase, N-terminal
IPR001155
NADH:flavin oxidoreductase/NADH oxidase, N-terminal Domain 94 (419) No
Aldolase-type TIM barrel
IPR013785
Aldolase-type TIM barrel Domain 97 (431) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013785 IPR001155


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
444 407 (92%) 323 (73%) [28; 366; 1040] ~318 2867 324