Family GP000056


Family ID GP000056  add to my list RDF
Family name Calcium-binding EF-hand calmodulin family   suggest a name
Cross-reference(s) PMID:
Genome-wide identification and analyses of the rice calmodulin and related potential calcium sensor proteins.
17263873 PMID:
Arabidopsis thaliana cDNA encoding a novel member of the EF-hand superfamily of calcium-binding proteins.
8278531
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Calcium-binding EF-hand calmodulin family
GP000056 (2410)
2
Calmodulin family
GP015100 (1940) , GP016264 (234) , GP017719 (210) ,
(plant-specificity: 19%)
GP111368 (10) ,
(plant-specificity: 92%)
GP111597 (9) ,
(plant-specificity: 60%)
GP113183 (5) , GP038922 (3) , GP118402 (3)
3 GP039817 (1775) , GP040895 (234) , GP042503 (210) , GP041915 (100) ,
(plant-specificity: 9%)
GP046123 (47) ,
(plant-specificity: 42%)
GP121304 (10) ,
(plant-specificity: 92%)
GP051960 (9) ,
(plant-specificity: 12%)
GP122301 (8) ,
(plant-specificity: 93%)
GP051197 (6) ,
(plant-specificity: 60%)
GP124511 (5) , GP068411 (3) , GP131768 (3)
4 GP069380 (1662) , GP070301 (234) , GP072502 (156) , GP071750 (100) , GP073961 (56) ,
(plant-specificity: 9%)
GP075795 (47) ,
(plant-specificity: 80%)
GP101884 (31) ,
(plant-specificity: 9%)
GP132811 (28) ,
(plant-specificity: 25%)
GP078758 (22) ,
(plant-specificity: 94%)
GP084641 (16) ,
(plant-specificity: 42%)
GP134947 (10) ,
(plant-specificity: 12%)
GP086040 (8) ,
(plant-specificity: 98%)
GP082915 (7) ,
(plant-specificity: 93%)
GP081889 (6) , GP141365 (4) , GP144885 (3) , GP087364 (3) , GP103267 (3) , GP149095 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 2410
Species Count (w/o splice) Count (w/ splice)
3 3
36 36
65 65
34 42
25 25
100 100
39 39
76 76
87 87
80 80
51 51
68 72
54 56
59 59
60 60
66 87
54 56
40 40
73 73
64 64
36 36
56 70
41 41
52 52
105 114
57 57
83 99
49 49
90 90
56 60
119 119
46 46
83 83
46 46
64 64
127 143
70 70


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Flagellar calcium-binding protein calflagin
IPR003299
Flagellar calcium-binding protein calflagin Family 1 (4) Yes
Protein of unknown function DUF2320
IPR018759
Protein of unknown function DUF2320 Family 1 (1) Yes
Protein of unknown function DUF3250
IPR021656
Protein of unknown function DUF3250 Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
EF-hand domain
IPR002048
EF-hand domain Domain 82 (1975) No
EF-hand domain pair
IPR011992
EF-hand domain pair Domain 95 (2279) No
EF-Hand 1, calcium-binding site
IPR018247
EF-Hand 1, calcium-binding site Binding_site 92 (2218) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011992 IPR002048 IPR018247


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)