Family GP000593


Family ID GP000593  add to my list RDF
Family name Trehalose-6-phosphate synthase family   suggest a name
Cross-reference(s) PMID:
The role of trehalose-6-phosphate synthase in Arabidopsis embryo development.
15667326 PMID:
Trehalose-6-phosphate synthase/phosphatase regulates cell shape and plant architecture in Arabidopsis.
17981987
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Trehalose-6-phosphate synthase family
GP000593 (428)
2 GP015496 (428)
3 GP040160 (428)
4 GP069637 (428)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 428
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
9 9
9 11
2 2
6 6
4 4
20 20
18 18
7 7
7 7
15 22
11 15
6 6
10 10
12 22
13 14
4 4
9 9
8 8
9 9
10 14
5 5
13 13
12 26
5 5
11 24
7 7
10 10
6 9
12 12
9 9
12 14
10 10
10 12
26 37
16 16


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
HAD-superfamily hydrolase, subfamily IIB
IPR006379
HAD-superfamily hydrolase, subfamily IIB Family 74 (317) No
Glycoside hydrolase family 15
IPR011613
Glycoside hydrolase family 15 Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Trehalose-phosphatase
IPR003337
Trehalose-phosphatase Domain 95 (405) No
HAD-like domain
IPR023214
HAD-like domain Domain 96 (409) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR023214 IPR003337 IPR006379


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
428 355 (83%) 320 (75%) [32; 366; 838] ~338 2131 266




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