Family GP000792


Family ID GP000792  add to my list RDF
Family name Aminotransferase class I/II superfamily   suggest a name
Family Ontology
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molecular_function
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0016813 (14%) - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Aminotransferase class I/II superfamily (plant-specificity: 9%)
GP000792 (430)
2
Serine palmitoyltransferase (lcb1 subunit)
GP017448 (217) ,
Serine palmitoyltransferase (lcb2 subunit)
GP017182 (116) ,
8-amino-7-oxononanoate synthase family
GP018582 (97)
3 GP042115 (217) , GP041880 (115) , GP043216 (97)
4 GP071595 (215) , GP071401 (115) , GP072725 (89) ,
(plant-specificity: 100%)
GP137742 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 430
Species Count (w/o splice) Count (w/ splice)
4 4
6 6
18 18
6 9
5 5
16 16
4 4
14 14
13 13
8 8
10 10
10 15
5 6
5 5
5 5
21 36
7 7
12 12
5 5
9 9
5 5
7 11
7 7
18 18
9 29
8 8
7 17
6 6
7 7
4 9
44 44
19 19
15 16
5 5
4 4
11 13
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Agmatinase-related
IPR005925
Agmatinase-related Family 1 (1) Yes
Ureohydrolase
IPR006035
Ureohydrolase Family 18 (79) Yes
2-amino-3-ketobutyrate coenzyme A ligase
IPR011282
2-amino-3-ketobutyrate coenzyme A ligase Family 1 (1) Yes
Arginase
IPR014033
Arginase Family 1 (2) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aminotransferase, class I/classII
IPR004839
Aminotransferase, class I/classII Domain 59 (255) No
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR015421
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 Domain 61 (263) No
Pyridoxal phosphate-dependent transferase
IPR015424
Pyridoxal phosphate-dependent transferase Domain 64 (277) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR015421 IPR015424 IPR004839


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
430 364 (85%) 252 (59%) [40; 364; 1703] ~358 3506 176