Family GP001250


Family ID GP001250  add to my list RDF
Family name RPM1-interacting protein 4 defence response family   suggest a name
Synonym(s) RIN4
Cross-reference(s) PMID:
RIN4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis.
11955429 PMID:
Arabidopsis RIN4 is a target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated resistance.
12581527 PMID:
The Pseudomonas syringae effector AvrRpt2 cleaves its C-terminally acylated target, RIN4, from Arabidopsis membranes to block RPM1 activation.
15845764
Family Ontology
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molecular_function
ADP binding
GO:0043531 (1%) - ADP binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
RPM1-interacting protein 4 defence response family (plant-specificity: 80%)
GP001250 (429)
2 GP015459 (1392) , GP017340 (323) , GP021024 (67) ,
(plant-specificity: 100%)
GP025336 (11) , GP111989 (9) ,
(plant-specificity: 100%)
GP112621 (6) ,
(plant-specificity: 100%)
GP027889 (5) , GP032380 (3)
3 GP040192 (946) , GP042208 (291) , GP046077 (67) ,
(plant-specificity: 100%)
GP049837 (16) ,
(plant-specificity: 100%)
GP054746 (11) , GP122152 (9) ,
(plant-specificity: 100%)
GP122769 (7) ,
(plant-specificity: 100%)
GP054699 (5) ,
(plant-specificity: 100%)
GP125864 (5) , GP126080 (4) , GP126349 (4) , GP060390 (3)
4
(plant-specificity: 97%)
GP080074 (343) , GP070339 (169) ,
(plant-specificity: 100%)
GP076723 (111) , GP075754 (67) ,
(plant-specificity: 100%)
GP080172 (16) , GP135446 (9) ,
(plant-specificity: 100%)
GP136038 (8) ,
(plant-specificity: 100%)
GP136909 (7) ,
(plant-specificity: 100%)
GP089704 (6) ,
(plant-specificity: 100%)
GP139143 (5) ,
(plant-specificity: 100%)
GP086480 (5) ,
(plant-specificity: 100%)
GP086432 (5) , GP141466 (4) , GP141892 (4) , GP093294 (3) , GP085775 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 429
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
9 9
12 15
4 4
7 7
7 7
23 23
12 12
8 8
9 9
14 15
11 15
9 9
18 18
14 19
10 11
6 6
9 9
9 9
9 9
11 14
10 10
9 9
17 31
8 8
10 14
10 10
13 13
11 17
14 14
10 10
10 10
6 6
9 10
24 25
10 10


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
CDC45 family
IPR003874
CDC45 family Family 14 (59) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Pathogenic type III effector avirulence factor Avr cleavage site
IPR008700
Pathogenic type III effector avirulence factor Avr cleavage site Domain 76 (328) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008700


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
429 386 (90%) 376 (88%) [52; 193; 2271] ~230 3235 55


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
429 376 (88%) 1.58227 1.11541 0.911882



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Species



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