Family GP000953


Family ID GP000953  add to my list RDF
Family name Phosphoglycerate kinase family   suggest a name
Synonym(s) Guanine, trna methyltransferase
Cross-reference(s) PMID:
Purification and cDNA isolation of chloroplastic phosphoglycerate kinase from Chlamydomonas reinhardtii.
7724671
Family Ontology
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molecular_function
tRNA (guanine-N7-)-methyltransferase activity
GO:0008176 (44%) - tRNA (guanine-N7-)-methyltransferase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Phosphoglycerate kinase family (plant-specificity: 9%)
GP000953 (423)
2 GP016227 (263) , GP018716 (81) , GP020670 (69) , GP111687 (8)
3 GP040860 (194) , GP043585 (66) , GP045681 (69) ,
(plant-specificity: 19%)
GP118956 (69) , GP121719 (15) , GP122292 (8)
4 GP070591 (181) ,
(plant-specificity: 19%)
GP078565 (69) , GP075334 (69) , GP073659 (66) , GP133758 (15) , GP082926 (13) , GP136274 (8)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 423
Species Count (w/o splice) Count (w/ splice)
3 3
6 6
58 58
12 18
6 6
15 15
6 6
9 9
9 9
10 10
7 7
7 13
5 6
9 9
7 7
10 28
7 10
7 7
5 5
5 5
5 5
5 7
6 6
15 15
5 17
5 5
8 25
6 6
11 11
5 8
14 14
8 8
9 9
7 7
5 11
10 27
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Phosphoglycerate kinase
IPR001576
Phosphoglycerate kinase Family 55 (234) No
tRNA (guanine-N-7) methyltransferase, eukaryote
IPR025763
tRNA (guanine-N-7) methyltransferase, eukaryote Family 14 (59) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Phosphoglycerate kinase, N-terminal
IPR015824
Phosphoglycerate kinase, N-terminal Domain 52 (222) No
Phosphoglycerate kinase, C-terminal
IPR015901
Phosphoglycerate kinase, C-terminal Domain 52 (218) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001576 IPR015901 IPR015824


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
423 332 (78%) 267 (63%) [27; 374; 947] ~360 1967 161