Family GP000751


Family ID GP000751  add to my list RDF
Family name Caffeoyl-coa o-methyltransferase family   suggest a name
Synonym(s) Ccoaomt , o-methyltransferase, family 3
Cross-reference(s) PMID:
Modifications in lignin and accumulation of phenolic glucosides in poplar xylem upon down-regulation of caffeoyl-coenzyme A O-methyltransferase, an enzyme involved in lignin biosynthesis.
10934215 PMID:
Identification of stress-responsive genes in an indica rice (Oryza sativa L.) using ESTs generated from drought-stressed seedlings.
17132712
Family Ontology
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molecular_function
catechol O-methyltransferase activity
GO:0016206 (4%) - catechol O-methyltransferase activity
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Caffeoyl-coa o-methyltransferase family (plant-specificity: 9%)
GP000751 (420)
2 GP015668 (393) ,
(plant-specificity: 9%)
GP027730 (25)
3 GP040330 (393) ,
(plant-specificity: 9%)
GP054494 (25)
4 GP069772 (393) ,
(plant-specificity: 14%)
GP086155 (16) ,
(plant-specificity: 19%)
GP140128 (5) , GP143258 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 420
Species Count (w/o splice) Count (w/ splice)
2 2
9 9
3 3
6 6
38 38
7 7
9 9
6 6
5 5
5 5
6 11
8 9
7 7
5 5
6 19
7 7
6 6
9 9
30 30
12 12
7 11
5 5
27 27
9 22
9 9
7 18
9 9
11 11
3 5
22 22
8 8
16 17
7 7
7 10
15 24
10 10


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
O-methyltransferase, family 3
IPR002935
O-methyltransferase, family 3 Family 93 (392) No
Catechol O-methyltransferase
IPR025782
Catechol O-methyltransferase Family 4 (16) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002935


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
420 358 (85%) 307 (73%) [30; 239; 1975] ~226 3588 188




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