Family GP000630


Family ID GP000630  add to my list RDF
Family name Nucleoside phosphatase gda1/cd39 family   suggest a name
Cross-reference(s) PMID:
Purification and cloning of a soluble ATP-diphosphohydrolase (apyrase) from potato tubers (Solanum tuberosum).
8579614 PMID:
Partial purification and immunohistochemical localization of ATP diphosphohydrolase from Schistosoma mansoni. Immunological cross-reactivities with potato apyrase and Toxoplasma gondii nucleoside triphosphate hydrolase.
8703025
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Nucleoside phosphatase gda1/cd39 family
GP000630 (423)
2 GP016356 (321) , GP018381 (102)
3 GP040997 (198) , GP041830 (121) , GP043100 (102)
4 GP070418 (198) , GP071244 (121) , GP072591 (102)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 423
Species Count (w/o splice) Count (w/ splice)
5 5
11 11
10 14
3 3
13 13
7 7
11 11
10 10
12 12
9 9
12 19
12 13
8 8
8 8
12 26
13 13
13 13
8 8
14 14
5 5
7 11
6 6
6 6
6 22
5 5
12 29
7 7
10 10
4 5
16 16
8 8
16 17
7 7
11 13
19 25
14 14


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Nucleoside phosphatase GDA1/CD39
IPR000407
Nucleoside phosphatase GDA1/CD39 Family 93 (395) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000407


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
423 349 (83%) 289 (68%) [52; 469; 1571] ~461 3053 217