Family GP000633


Family ID GP000633  add to my list RDF
Family name Glycerol-3-phosphate acyltransferase family   suggest a name
Cross-reference(s) PMID:
Arabidopsis AtGPAT1, a member of the membrane-bound glycerol-3-phosphate acyltransferase gene family, is essential for tapetum differentiation and male fertility.
12897259
Comment
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Glycerol-3-phosphate acyltransferase family (plant-specificity: 70%)
GP000633 (420)
2
Glycerol-3-phosphate acyltransferase family
GP015523 (420)
3 GP040194 (419)
4 GP069662 (419)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 420
Species Count (w/o splice) Count (w/ splice)
7 8
12 12
9 9
6 6
17 17
16 16
16 16
11 11
21 21
16 16
13 13
19 19
15 17
16 16
8 8
13 13
8 8
6 6
9 9
9 9
12 12
14 14
10 10
9 10
9 9
10 10
6 6
14 14
13 13
15 15
8 8
10 10
24 26
13 13


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Phospholipid/glycerol acyltransferase
IPR002123
Phospholipid/glycerol acyltransferase Domain 79 (330) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002123


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
420 414 (99%) 371 (88%) [65; 503; 1755] ~465 2942 385




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