Family GP000748


Family ID GP000748  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Plant-specific plant-specific
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 100%)
GP000748 (419)
2 GP015953 (360) ,
(plant-specificity: 9%)
GP019298 (59)
3 GP041411 (267) , GP043002 (93) ,
(plant-specificity: 9%)
GP044144 (59)
4 GP070902 (180) , GP072503 (93) , GP072783 (81) , GP073675 (59) , GP141092 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 419
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
6 7
4 4
6 6
6 6
15 15
14 14
10 10
7 7
13 13
9 9
11 11
12 12
17 26
11 11
8 8
13 13
11 11
7 7
11 11
7 7
12 12
15 28
9 9
15 22
8 8
11 11
9 12
26 26
12 12
10 10
11 11
10 10
25 25
12 12


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
419 386 (92%) 316 (75%) [52; 579; 1157] ~489 2131 251