Family GP012119


Family ID GP012119  add to my list RDF
Family name Glucose-1-phosphate adenylyltransferase   suggest a name
Synonym(s) Adp-glucose pyrophosphorylase
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Glucose-1-phosphate adenylyltransferase (plant-specificity: 9%)
GP012119 (416)
2 GP015581 (413) , GP036134 (3)
3 GP040263 (411) , GP065100 (3)
4 GP069726 (410) , GP096816 (3) , GP099436 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 416
Species Count (w/o splice) Count (w/ splice)
4 4
43 43
13 14
5 5
13 13
6 6
8 8
8 8
14 14
9 9
7 18
5 8
5 5
6 6
8 22
7 8
5 5
6 6
7 7
6 6
6 7
6 6
19 19
11 28
6 6
9 18
6 6
13 13
5 9
23 23
8 8
7 7
7 7
7 16
15 22
6 6


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Glucose-1-phosphate adenylyltransferase
IPR011831
Glucose-1-phosphate adenylyltransferase Family 60 (251) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Nucleotidyl transferase
IPR005835
Nucleotidyl transferase Domain 89 (370) No
ADP-glucose pyrophosphorylase, conserved site
IPR005836
ADP-glucose pyrophosphorylase, conserved site Conserved_site 82 (342) No
Trimeric LpxA-like
IPR011004
Trimeric LpxA-like Domain 81 (339) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005835 IPR011004 IPR005836 IPR011831


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
416 339 (81%) 299 (72%) [53; 516; 1536] ~466 3820 415




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