Family GP001558


Family ID GP001558  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Tracheophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 100%)
GP001558 (413)
2 GP018583 (133) ,
(plant-specificity: 100%)
GP018972 (101) ,
(plant-specificity: 100%)
GP023937 (75) ,
(plant-specificity: 19%)
GP022629 (32) ,
(plant-specificity: 100%)
GP025549 (29) ,
(plant-specificity: 100%)
GP024612 (20) ,
(plant-specificity: 100%)
GP111317 (9) ,
(plant-specificity: 100%)
GP036775 (8) , GP028330 (3) , GP116515 (3)
3 GP043319 (133) ,
(plant-specificity: 100%)
GP045309 (101) ,
(plant-specificity: 100%)
GP049816 (39) ,
(plant-specificity: 19%)
GP048048 (32) ,
(plant-specificity: 100%)
GP050381 (20) ,
(plant-specificity: 100%)
GP119861 (19) ,
(plant-specificity: 100%)
GP120586 (15) ,
(plant-specificity: 100%)
GP050331 (13) ,
(plant-specificity: 100%)
GP051637 (10) ,
(plant-specificity: 100%)
GP121730 (9) ,
(plant-specificity: 100%)
GP062569 (6) , GP055277 (3) , GP065777 (4) , GP068163 (4) , GP129398 (3)
4 GP073056 (104) ,
(plant-specificity: 100%)
GP078618 (45) ,
(plant-specificity: 12%)
GP077614 (31) ,
(plant-specificity: 100%)
GP093888 (29) ,
(plant-specificity: 100%)
GP132845 (27) ,
(plant-specificity: 100%)
GP133720 (15) ,
(plant-specificity: 100%)
GP080848 (14) ,
(plant-specificity: 100%)
GP134334 (12) ,
(plant-specificity: 100%)
GP134957 (10) ,
(plant-specificity: 100%)
GP082448 (10) ,
(plant-specificity: 100%)
GP135363 (9) ,
(plant-specificity: 100%)
GP135383 (9) ,
(plant-specificity: 100%)
GP135396 (9) ,
(plant-specificity: 100%)
GP135502 (9) ,
(plant-specificity: 100%)
GP080801 (9) ,
(plant-specificity: 100%)
GP136043 (8) ,
(plant-specificity: 100%)
GP084332 (7) ,
(plant-specificity: 100%)
GP096463 (6) ,
(plant-specificity: 100%)
GP082323 (6) ,
(plant-specificity: 100%)
GP091471 (5) ,
(plant-specificity: 100%)
GP139126 (5) , GP142013 (4) , GP100163 (4) , GP102951 (4) , GP145097 (3) , GP145431 (3) , GP146200 (3) , GP099343 (3) , GP146795 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 413
Species Count (w/o splice) Count (w/ splice)
1 1
17 17
12 12
10 10
11 11
13 13
2 2
11 13
6 6
8 8
11 11
14 14
11 11
8 8
17 17
16 16
3 3
8 8
10 10
10 10
17 19
12 12
17 18
10 10
15 15
10 10
20 20
11 11
23 23
9 9
17 17
33 34
14 14


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
413 407 (99%) 396 (96%) [56; 140; 515] ~143 1093 57


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
413 396 (96%) 1.40803 1.18825 0.512532



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Species



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