Family GP000701


Family ID GP000701  add to my list RDF
Family name Caspase family   suggest a name
Synonym(s) Latex-abundant family (AMC), peptidase c14, caspase catalytic
Cross-reference(s) PMID:
Evolutionary lines of cysteine peptidases.
11517925 PMID:
The domains of apoptosis: a genomics perspective.
15226512 PMID:
Death without caspases, caspases without death.
15066636
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Caspase family
GP000701 (414)
2
Metacaspase subfamily
GP016122 (246) ,
ICE-like protease (caspase) subfamily
GP016992 (159) ,
(plant-specificity: 100%)
GP112087 (7)
3 GP040742 (244) , GP041634 (157) ,
(plant-specificity: 100%)
GP122885 (7)
4 GP070158 (244) , GP071025 (157) ,
(plant-specificity: 100%)
GP137075 (7)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 414
Species Count (w/o splice) Count (w/ splice)
3 3
2 2
7 15
4 4
18 18
5 5
8 8
7 7
6 6
8 8
8 8
10 12
10 10
12 12
14 18
12 13
10 10
7 7
8 8
7 7
9 11
7 7
9 9
17 25
11 11
14 22
9 9
13 13
6 7
21 21
27 27
18 19
9 9
9 9
16 25
9 9


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
5-Hydroxytryptamine 6 receptor
IPR002232
5-Hydroxytryptamine 6 receptor Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Peptidase C14, caspase domain
IPR011600
Peptidase C14, caspase domain Domain 91 (377) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011600


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
414 369 (89%) 340 (82%) [46; 362; 1120] ~340 3483 178


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
414 340 (82%) 1.61631 1.42279 0.511232



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