Family GP000632


Family ID GP000632  add to my list RDF
Family name Yabby transcription factor family   suggest a name
Cross-reference(s) PMID:
The YABBY gene family and abaxial cell fate.
10679447 PMID:
FILAMENTOUS FLOWER controls the formation and development of Arabidopsis inflorescences and floral meristems.
9878633
Family Ontology
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N/A
Curation status ?
Found in Spermatophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Yabby transcription factor family (plant-specificity: 97%)
GP000632 (413)
2 GP015522 (413)
3 GP040188 (413)
4 GP069658 (413)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 413
Species Count (w/o splice) Count (w/ splice)
3 3
5 5
25 25
17 17
7 7
3 3
8 15
8 13
6 6
9 9
13 33
8 8
6 6
7 7
9 9
7 7
6 8
9 9
18 18
12 38
9 9
12 35
6 6
15 15
8 16
12 12
6 6
8 8
8 8
8 9
17 34
9 9


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
YABBY protein
IPR006780
YABBY protein Family 96 (396) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
High mobility group box domain
IPR009071
High mobility group box domain Domain 84 (348) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR009071 IPR006780


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
413 304 (74%) 295 (71%) [42; 187; 538] ~188 1353 107


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
413 295 (71%) 0.530066 0.427826 0.232854



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Species



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