Family GP000397


Family ID GP000397  add to my list RDF
Family name Cytokinin dehydrogenase family   suggest a name
Synonym(s) Cytokinin dehydrogenase 1, fad and cytokinin binding
Cross-reference(s) PMID:
Structure and function of cytokinin oxidase/dehydrogenase genes of maize, rice, Arabidopsis and other species.
12721786 PMID:
Regulation of plant growth by cytokinin.
11504909 PMID:
Molecular and biochemical characterization of a cytokinin oxidase from maize.
11154345
Family Ontology
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molecular_function
UDP-N-acetylmuramate dehydrogenase activity
GO:0008762 (76%) - UDP-N-acetylmuramate dehydrogenase activity
cytokinin dehydrogenase activity
GO:0019139 (90%) - cytokinin dehydrogenase activity
biological_process
cytokinin metabolic process
GO:0009690 (90%) - cytokinin metabolic process
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Cytokinin dehydrogenase family (plant-specificity: 9%)
GP000397 (413)
2 GP015611 (413)
3 GP040278 (413)
4 GP069729 (413)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 413
Species Count (w/o splice) Count (w/ splice)
6 6
2 2
17 17
8 8
19 19
19 19
25 25
12 12
11 12
13 14
9 9
12 12
15 20
11 11
5 5
8 8
9 9
11 11
7 9
7 7
8 8
14 22
5 5
9 9
6 6
7 7
10 11
20 20
13 13
15 15
8 8
10 10
19 26
18 18


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
FAD linked oxidase, N-terminal
IPR006094
FAD linked oxidase, N-terminal Domain 85 (350) No
Cytokinin dehydrogenase 1, FAD/cytokinin binding domain
IPR015345
Cytokinin dehydrogenase 1, FAD/cytokinin binding domain Domain 90 (372) No
FAD-linked oxidase-like, C-terminal
IPR016164
FAD-linked oxidase-like, C-terminal Domain 90 (371) No
FAD-binding, type 2
IPR016166
FAD-binding, type 2 Domain 88 (364) No
FAD-binding, type 2, subdomain 1
IPR016167
FAD-binding, type 2, subdomain 1 Domain 76 (312) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006094 IPR016166 IPR016167 IPR016164 IPR015345


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
413 388 (94%) 329 (80%) [52; 518; 1374] ~458 3917 386