Family GP001126


Family ID GP001126  add to my list RDF
Family name Acyl carrier protein family   suggest a name
Synonym(s) ACP
Family Ontology
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molecular_function
phosphopantetheine binding
GO:0031177 (18%) - phosphopantetheine binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Acyl carrier protein family (plant-specificity: 19%)
GP001126 (412)
2
Chloroplastic acyl carrier protein subfamily
GP016143 (219) ,
Mitochondrial acyl carrier protein subfamily
GP016624 (183) , GP028384 (3) , GP116794 (3)
3 GP040773 (219) , GP041240 (183) , GP055348 (3) , GP129824 (3)
4 GP070196 (219) , GP070673 (181) , GP087204 (3) , GP146798 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 412
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
8 8
10 13
6 6
18 18
6 6
10 10
8 8
11 11
9 9
10 15
8 9
9 9
11 11
12 20
9 9
7 7
9 9
9 9
8 8
9 12
8 8
12 12
12 23
7 7
13 29
7 7
14 14
8 8
27 27
9 9
8 10
6 6
8 8
16 24
9 9


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Acyl carrier protein (ACP)
IPR003231
Acyl carrier protein (ACP) Family 78 (322) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Phosphopantetheine attachment site
IPR006162
Phosphopantetheine attachment site PTM 56 (231) No
Acyl carrier protein-like
IPR009081
Acyl carrier protein-like Domain 92 (380) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR009081 IPR003231 IPR006162


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
412 355 (86%) 350 (85%) [36; 131; 567] ~130 1370 70


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
412 350 (85%) 2.2499 2.32676 0.782598



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