Family GP000796


Family ID GP000796  add to my list RDF
Family name Hexokinase family   suggest a name
Cross-reference(s) PMID:
The genome sequence and structure of rice chromosome 1.
12447438 PMID:
A fine physical map of the rice chromosome 5.
16261349
Family Ontology
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molecular_function
hexokinase activity
GO:0004396 (37%) - hexokinase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Hexokinase family
GP000796 (407)
2 GP015695 (350) , GP019581 (54) , GP115859 (3)
3 GP040356 (350) , GP044474 (54) , GP128315 (3)
4 GP069793 (350) , GP074032 (54) , GP144550 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 407
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
3 3
12 17
5 5
18 18
6 6
13 13
12 12
13 13
10 10
12 15
12 14
11 11
8 8
10 19
8 8
8 8
7 7
7 7
10 10
7 8
9 9
18 18
9 22
6 6
8 19
6 6
9 9
8 21
16 16
12 12
9 9
6 6
8 9
19 22
8 8


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Hexokinase
IPR001312
Hexokinase Family 77 (312) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Hexokinase, C-terminal
IPR022673
Hexokinase, C-terminal Domain 77 (313) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001312
Hexokinase, N-terminal
IPR022672 IPR022673
Hexokinase, conserved site
IPR019807



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
407 346 (85%) 283 (70%) [28; 482; 853] ~413 2489 418