Family GP000046


Family ID GP000046  add to my list RDF
Family name GRAS transcription factor family   suggest a name
Cross-reference(s) PMID:
The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes.
10341448
Family Ontology
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N/A
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
GRAS transcription factor family
GP000046 (2277)
2 GP015177 (2031) , GP016567 (170) ,
(plant-specificity: 73%)
GP021150 (50) , GP113163 (3) ,
(plant-specificity: 100%)
GP113281 (5) , GP116191 (3) , GP116198 (3) , GP036497 (3)
3 GP040096 (1565) , GP040046 (414) , GP041199 (170) ,
(plant-specificity: 73%)
GP046204 (50) ,
(plant-specificity: 85%)
GP045591 (50) ,
(plant-specificity: 100%)
GP124658 (5) , GP126045 (3) , GP126240 (3) , GP126401 (2) , GP128881 (3) , GP065481 (3)
4
PAT1 subfamily
GP069799 (975) ,
LAS/SCR/SHR subfamily
GP069536 (414) , GP070111 (176) , GP070684 (170) , GP071313 (121) ,
DELLA subfamily
GP072067 (94) , GP072304 (94) , GP071980 (88) , GP075017 (43) ,
(plant-specificity: 73%)
GP075886 (42) , GP135636 (9) ,
(plant-specificity: 87%)
GP099349 (7) ,
(plant-specificity: 76%)
GP139271 (5) ,
(plant-specificity: 100%)
GP139566 (5) , GP144108 (3) , GP145009 (3) , GP096889 (3) , GP099854 (3) , GP149026 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 2277
Species Count (w/o splice) Count (w/ splice)
44 50
49 49
47 47
47 47
76 76
72 72
85 85
47 47
68 78
48 48
44 44
64 64
85 105
71 73
53 53
59 59
54 54
42 42
34 37
45 45
50 50
76 103
46 46
103 148
48 48
78 78
36 42
127 127
72 72
75 75
50 50
55 63
119 139
61 61


Information to display




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No IPR family


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IPR Annotation Type % Occurence Specificity
Transcription factor GRAS
IPR005202
Transcription factor GRAS Domain 91 (2072) No

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Close Representative InterPro domains - Consensus schema
IPR005202


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