Family GP000710


Family ID GP000710  add to my list RDF
Family name Calmodulin-binding transcription activator (camta)family   suggest a name
Cross-reference(s) PMID:
Arabidopsis CAMTA family proteins enhance V-PPase expression in pollen.
14581622 PMID:
A novel family of calmodulin-binding transcription activators in multicellular organisms.
11925432 PMID:
A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants.
12218065
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Calmodulin-binding transcription activator (camta)family (plant-specificity: 96%)
GP000710 (406)
2 GP015672 (403) , GP030492 (3)
3 GP040335 (403) , GP058077 (3)
4 GP069784 (403) , GP090741 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 406
Species Count (w/o splice) Count (w/ splice)
1 1
3 4
8 8
10 10
4 4
17 17
15 15
16 16
12 12
7 10
7 10
7 7
8 8
12 20
7 7
5 5
4 4
9 9
8 8
6 10
7 7
28 28
12 41
5 5
7 21
6 6
6 6
5 7
24 24
11 11
12 13
9 9
8 9
17 25
9 9


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
IQ motif, EF-hand binding site
IPR000048
IQ motif, EF-hand binding site Binding_site 73 (298) No
Ankyrin repeat
IPR002110
Ankyrin repeat Repeat 69 (279) No
CG-1 DNA-binding domain
IPR005559
CG-1 DNA-binding domain Domain 74 (300) No
Immunoglobulin-like fold
IPR013783
Immunoglobulin-like fold Domain 61 (246) No
Immunoglobulin E-set
IPR014756
Immunoglobulin E-set Domain 73 (297) No
Ankyrin repeat-containing domain
IPR020683
Ankyrin repeat-containing domain Domain 75 (305) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000048 IPR002110 IPR014756 IPR013783 IPR005559 IPR020683


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
406 332 (82%) 252 (62%) [35; 912; 1485] ~766 3869 482