Family GP105557

Family ID GP105557  add to my list RDF
Family name Unannotated cluster   suggest a name
Curation status ?
Found in Theobroma cacao plant-specific
Phylogenetic analyzes Phylogeny done

Clustering level Family ID (number of sequences)
(plant-specificity: 100%)
GP105557 (11)
(plant-specificity: 100%)
GP024765 (11)
(plant-specificity: 100%)
GP050554 (11)
(plant-specificity: 100%)
GP081028 (11)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.

  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.

Sequence total: 11
Species Count (w/o splice) Count (w/ splice)
11 11

Information to display

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Close InterPro family

No IPR family

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)

Close Domain architecture

Close Representative InterPro domains - Consensus schema

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Information to display

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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:

Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
11 11 (100%) 11 (100%) [56; 84; 110] ~80 120 76

Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
11 11 (100%) 0.416276 0.275983 0.195199

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