Family GP000693


Family ID GP000693  add to my list RDF
Family name Plant neutral invertase family   suggest a name
Synonym(s) Beta-fructofuranosidase
Cross-reference(s) PMID:
Purification and characterization of neutral and alkaline invertase from carrot.
8972597
Family Ontology
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N/A
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Plant neutral invertase family
GP000693 (408)
2 GP015584 (408)
3 GP040252 (408)
4 GP069715 (408)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 408
Species Count (w/o splice) Count (w/ splice)
9 9
5 5
18 18
6 6
12 12
12 12
14 14
6 6
8 14
8 9
9 9
8 8
10 19
7 7
7 7
8 8
11 11
11 11
9 13
10 10
20 20
16 35
9 9
16 25
11 11
11 11
5 6
19 19
8 8
11 11
7 7
6 6
15 23
9 9


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Glycosyl hydrolase family 100
IPR024746
Glycosyl hydrolase family 100 Family 97 (396) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Six-hairpin glycosidase-like
IPR008928
Six-hairpin glycosidase-like Domain 91 (371) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR024746 IPR008928


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
408 351 (86%) 304 (75%) [36; 563; 1574] ~526 2820 443




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