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Family GP006280

Family ID GP006280  add to my list RDF
Family name Plant thionin group   suggest a name
Curation status ?
Found in Arabidopsis thaliana plant-specific
Phylogenetic analyzes Phylogeny done

Clustering level Family ID (number of sequences)
Plant thionin group (plant-specificity: 100%)
GP006280 (10)
(plant-specificity: 100%)
GP025682 (6) , GP029374 (4)
(plant-specificity: 100%)
GP051787 (6) , GP056512 (4)
(plant-specificity: 100%)
GP082605 (6) , GP088498 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.

  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.

Sequence total: 10
Species Count (w/o splice) Count (w/ splice)
10 10

Information to display

(click on chart bars above to get species proteins)

Close InterPro family

No IPR family

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)

Close Domain architecture

Close Representative InterPro domains - Consensus schema

Build your own display:   ?

Information to display

(click on the button above to get your protein list)

[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:

Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
10 10 (100%) 10 (100%) [66; 82; 100] ~79 105 48

Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
10 10 (100%) 1.01183 0.9678 0.267789

for (default: all):

(click on the button above to get your homolog prediction list)