Family GP000765


Family ID GP000765  add to my list RDF
Family name Wax Synthesis family   suggest a name
Cross-reference(s) PMID:
Cloning and characterization of the WAX2 gene of Arabidopsis involved in cuticle membrane and wax production.
12724542 PMID:
The YORE-YORE gene regulates multiple aspects of epidermal cell differentiation in Arabidopsis.
12974811 PMID:
A novel male-sterile mutant of Arabidopsis thaliana, faceless pollen-1, produces pollen with a smooth surface and an acetolysis-sensitive exine.
14756310
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Wax Synthesis family (plant-specificity: 9%)
GP000765 (406)
2 GP015673 (404)
3 GP040337 (404)
4 GP069782 (404)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 406
Species Count (w/o splice) Count (w/ splice)
9 9
4 4
5 5
30 30
7 7
10 10
8 8
13 13
4 4
8 12
8 8
12 12
8 8
6 24
10 10
4 4
11 11
14 14
17 17
4 8
4 4
22 22
9 30
17 17
6 22
3 3
7 7
5 7
22 22
5 5
20 20
4 4
3 4
10 14
7 7


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Phenylacetic acid degradation B
IPR009359
Phenylacetic acid degradation B Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Fatty acid hydroxylase
IPR006694
Fatty acid hydroxylase Domain 69 (279) No
Uncharacterised domain Wax2, C-terminal
IPR021940
Uncharacterised domain Wax2, C-terminal Domain 73 (296) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006694 IPR021940


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
406 336 (83%) 232 (57%) [53; 562; 2763] ~467 4078 475