Family GP000129


Family ID GP000129  add to my list RDF
Family name Signal transduction superfamily   suggest a name
Comment Containing ARR-B transcription factors
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Signal transduction superfamily (plant-specificity: 60%)
GP000129 (2217)
2 GP015227 (802) ,
Pseudo-response regulator family
GP015864 (422) , GP015479 (415) , GP016018 (284) , GP016692 (198) , GP023840 (32) ,
(plant-specificity: 100%)
GP033084 (18) ,
(plant-specificity: 94%)
GP112639 (5) ,
(plant-specificity: 91%)
GP113171 (6) ,
(plant-specificity: 66%)
GP026092 (6) , ,div ad}"family_26842_tooltip" class="hidden-tooltip">Signal transduction response regulator group 1 (plant-specificity: 100%) GP031130 (5) , GP029023 (5) ,
(plant-specificity: 82%)
GP114089 (5) , GP114233 (4) , GP030848 (3) , GP115753 (3)
3 GP039993 (789) , GP040144 (415) , GP040511 (332) , GP040658 (284) , GP043033 (198) , GP043528 (81) , GP049376 (32) ,
(plant-specificity: 100%)
GP061438 (14) ,
(plant-specificity: 90%)
GP121120 (13) ,
(plant-specificity: 19%)
GP121711 (9) ,
(plant-specificity: 91%)
GP123526 (6) ,
(plant-specificity: 66%)
GP052367 (6) ,
(plant-specificity: 82%)
GP124332 (5) , GP124499 (4) ,
(plant-specificity: 100%)
GP058853 (5) , GP056104 (5) ,
(plant-specificity: 94%)
GP124765 (5) , GP126148 (4) , GP128100 (3) , GP064667 (3)
4 GP069497 (722) , GP069623 (415) , GP070092 (284) , GP070715 (212) , GP072526 (120) , GP073045 (116) , GP072719 (82) , GP073040 (81) ,
(plant-specificity: 90%)
GP132882 (26) ,
(plant-specificity: 82%)
GP132909 (25) , GP094110 (15) ,
(plant-specificity: 100%)
GP088562 (14) ,
(plant-specificity: 90%)
GP134208 (13) , GP086982 (11) ,
(plant-specificity: 19%)
GP135471 (9) ,
(plant-specificity: 100%)
GP135646 (9) ,
(plant-specificity: 91%)
GP137915 (6) ,
(plant-specificity: 66%)
GP083389 (6) ,
(plant-specificity: 82%)
GP139007 (5) ,
(plant-specificity: 100%)
GP091614 (5) , GP088035 (5) ,
(plant-specificity: 94%)
GP139703 (5) ,
(plant-specificity: 100%)
GP139715 (5) , GP141596 (4) , GP141936 (4) , GP144123 (3) , GP098954 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 2217
M !
Species Count (w/o splice) Count (w/ splice)
3 3
12 12
26 26
27 35
18 18
68 68
23 23
72 72
59 59
68 68
52 52
41 62
39 50
43 43
48 48
5182
43 46
27 27
52 52
58 58
42 42
44 63
59 60
102 102
61 143
38 38
53 192
60 60
62 62
35 56
66 66
51 51
87 88
46 46
50 56
90 136
52 52


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB
IPR011879
Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB Family 1 (2) Yes
Response regulator, plant B-type
IPR017053
Response regulator, plant B-type Family 12 (268) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Signal transduction response regulator, receiver domain
IPR001789
Signal transduction response regulator, receiver domain Domain 63 (1396) No
CheY-like superfamily
IPR011006
CheY-like superfamily Domain 64 (1424) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011006 IPR001789


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Species
Information to display
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