Family GP000586


Family ID GP000586  add to my list RDF
Family name Unknown function duf617 family   suggest a name
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Unknown function duf617 family (plant-specificity: 98%)
GP000586 (398)
2 GP015554 (398)
3 GP040226 (398)
4 GP069706 (395) , GP100278 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 398
Species Count (w/o splice) Count (w/ splice)
3 3
3 3
11 11
10 10
16 16
17 17
19 19
4 4
14 14
11 11
10 10
15 15
18 19
13 13
8 8
14 14
14 14
6 6
12 13
7 7
10 10
16 17
10 10
14 14
9 9
15 15
9 9
20 20
9 9
11 11
9 9
10 10
18 18
10 10


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Protein of unknown function DUF617, plant
IPR006460
Protein of unknown function DUF617, plant Family 95 (380) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006460


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
398 395 (99%) 389 (98%) [47; 252; 571] ~251 1801 144


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
398 389 (98%) 2.12429 2.09399 0.342121



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Species



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