Family GP000542


Family ID GP000542  add to my list RDF
Family name Inorganic pyrophosphatase family   suggest a name
Family Ontology
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biological_process
phosphate-containing compound metabolic process
GO:0006796 (94%) - phosphate-containing compound metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Inorganic pyrophosphatase family (plant-specificity: 30%)
GP000542 (395)
2 GP015757 (302) , GP018427 (91)
3 GP040413 (302) , GP043139 (91)
4 GP069849 (302) , GP072641 (91)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 395
Species Count (w/o splice) Count (w/ splice)
2 2
3 3
17 17
11 14
4 4
5 5
5 5
11 11
10 10
12 12
9 9
9 16
7 16
6 6
7 7
9 22
7 9
5 5
7 7
7 7
8 8
6 6
4 4
14 14
11 36
5 5
6 18
5 5
6 6
4 16
16 16
8 8
9 12
6 6
6 8
16 32
8 8


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Inorganic pyrophosphatase
IPR008162
Inorganic pyrophosphatase Family 94 (370) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008162


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Species
 !-- BEGIN species/species_name.tt -->
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
395 291 (74%) 274 (69%) [62; 215; 835] ~226 2156 173


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
395 274 (69%) 1.90211 1.41683 0.770677



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