Family GP000519


Family ID GP000519  add to my list RDF
Family name Histidine Phosphotransfer family   suggest a name
Cross-reference(s) PMID:
Histidine-containing phosphotransfer (HPt) signal transducers implicated in His-to-Asp phosphorelay in Arabidopsis.
10050311 PMID:
Compilation and characterization of histidine-containing phosphotransmitters implicated in His-to-Asp phosphorelay in plants: AHP signal transducers of Arabidopsis thaliana.
11193423
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Histidine Phosphotransfer family (plant-specificity: 90%)
GP000519 (393)
2 GP015559 (393)
3 GP040266 (393)
4 GP069733 (393)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 393
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
4 4
2 2
12 12
4 4
10 10
6 6
3 3
5 5
5 8
9 9
12 12
5 5
6 16
5 5
6 6
8 8
8 8
9 9
8 11
10 10
24 24
19 41
14 14
18 27
10 10
19 19
7 10
15 15
9 9
10 11
8 8
10 10
22 29
11 11


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Signal transduction histidine kinase, phosphotransfer (Hpt) domain
IPR008207
Signal transduction histidine kinase, phosphotransfer (Hpt) domain Domain 92 (363) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008207


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
393 335 (85%) 327 (83%) [29; 151; 584] ~148 1253 117


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
393 327 (83%) 1.23515 1.21682 0.279464



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