Family GP000696


Family ID GP000696  add to my list RDF
Family name Unknown function duf1637 family   suggest a name
Family Ontology
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molecular_function
cysteamine dioxygenase activity
GO:0047800 (92%) - cysteamine dioxygenase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Unknown function duf1637 family
GP000696 (394)
2 GP015583 (389) , GP117339 (3)
3 GP040251 (389) , GP130508 (3)
4 GP069714 (389) , GP147591 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 394
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
1 1
3 4
2 2
13 13
3 3
17 17
14 14
9 9
8 8
14 21
7 8
5 5
15 15
10 24
10 12
5 5
5 5
6 6
7 7
5 8
5 5
12 12
8 33
6 6
9 25
5 5
11 11
4 6
15 15
11 11
13 14
6 6
9 12
19 35
8 8


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Cysteamine dioxygenase
IPR012864
Cysteamine dioxygenase Family 92 (361) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
RmlC-like cupin domain
IPR011051
RmlC-like cupin domain Domain 91 (358) No
RmlC-like jelly roll fold
IPR014710
RmlC-like jelly roll fold Domain 86 (339) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011051 IPR014710 IPR012864


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
394 302 (77%) 280 (71%) [34; 247; 699] ~246 2344 173


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
394 280 (71%) 1.25701 1.23156 0.40993



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