Family GP000889


Family ID GP000889  add to my list RDF
Family name Sec23 sec24 family   suggest a name
Cross-reference(s) PMID:
CEF, a sec24 homologue of Arabidopsis thaliana, enhances the survival of yeast under oxidative stress conditions.
11053466 PMID:
Structure of the Sec23p/24p and Sec13p/31p complexes of COPII.
11535824 PMID:
Structure of the Sec23/24-Sar1 pre-budding complex of the COPII vesicle coat.
12239560
Family Ontology
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cellular_component
COPII vesicle coat
GO:0030127 (58%) - COPII vesicle coat
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Sec23 sec24 family
GP000889 (389)
2 GP015459 (1392) , GP016148 (260) ,
(plant-specificity: 80%)
GP109052 (86) ,
(plant-specificity: 19%)
GP019351 (84) ,
(plant-specificity: 100%)
GP109605 (25) ,
(plant-specificity: 92%)
GP027470 (14) ,
(plant-specificity: 100%)
GP030261 (11) , GP114030 (4) , GP118088 (3)
3 GP040192 (946) , GP040749 (260) , GP043902 (84) ,
(plant-specificity: 80%)
GP118909 (73) ,
(plant-specificity: 98%)
GP046657 (61) ,
(plant-specificity: 100%)
GP119450 (25) ,
(plant-specificity: 99%)
GP054929 (20) ,
(plant-specificity: 86%)
GP120422 (17) ,
(plant-specificity: 92%)
GP054059 (14) ,
(plant-specificity: 100%)
GP057787 (11) , GP125682 (4) , GP129893 (3) , GP131397 (3)
4
(plant-specificity: 97%)
GP080074 (343) , GP070170 (260) , GP073407 (84) ,
(plant-specificity: 80%)
GP132507 (52) ,
(plant-specificity: 100%)
GP132924 (25) ,
(plant-specificity: 62%)
GP133204 (20) ,
(plant-specificity: 99%)
GP086717 (16) ,
(plant-specificity: 60%)
GP133733 (15) ,
(plant-specificity: 92%)
GP085462 (14) ,
(plant-specificity: 66%)
GP134349 (12) ,
(plant-specificity: 100%)
GP090391 (11) ,
(plant-specificity: 100%)
GP102861 (10) , GP138435 (6) , GP140792 (4) , GP146862 (3) , GP148658 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 389
Species Count (w/o splice) Count (w/ splice)
2 2
24 24
25 25
11 12
8 8
20 20
7 7
9 9
7 7
15 15
11 11
5 6
5 6
5 5
5 5
9 20
4 4
4 4
7 7
4 4
3 3
4 6
9 9
20 20
10 35
6 6
7 25
4 4
7 7
5 9
29 29
4 4
8 8
4 4
5 5
9 11
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Zinc finger, Sec23/Sec24-type
IPR006895
Zinc finger, Sec23/Sec24-type Domain 59 (231) No
Sec23/Sec24, trunk domain
IPR006896
Sec23/Sec24, trunk domain Domain 68 (266) No
Sec23/Sec24, helical domain
IPR006900
Sec23/Sec24, helical domain Domain 58 (226) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006895 IPR006900 IPR006896


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
389 324 (83%) 198 (51%) [56; 746; 2586] ~688 4960 291