Family GP000760


Family ID GP000760  add to my list RDF
Family name Primary amine oxidase family   suggest a name
Synonym(s) Copper amine oxidase
Cross-reference(s) PMID:
Catalytic mechanism of the quinoenzyme amine oxidase from Escherichia coli: exploring the reductive half-reaction.
9048544 PMID:
Crystal structure of a quinoenzyme: copper amine oxidase of Escherichia coli at 2 A resolution.
8591028
Family Ontology
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molecular_function
binding
GO:0005488 (1%) - binding
primary amine oxidase activity
GO:0008131 (80%) - primary amine oxidase activity
biological_process
amine metabolic process
GO:0009308 (80%) - amine metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Primary amine oxidase family (plant-specificity: 9%)
GP000760 (392)
2 (392)
3 GP040881 (247) , GP041938 (145)
4 GP070362 (247) , GP071337 (145)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 392
Species Count (w/o splice) Count (w/ splice)
3 3
5 5
7 10
2 2
14 14
6 6
9 9
7 7
11 11
4 4
9 10
4 6
8 8
5 5
4 6
7 7
10 10
10 10
9 9
9 9
10 10
9 9
17 17
11 29
7 7
11 26
9 9
10 10
7 8
23 23
14 14
17 18
8 8
12 15
17 28
10 10


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Copper amine oxidase, C-terminal
IPR015798
Copper amine oxidase, C-terminal Domain 91 (355) ( $ No
Copper amine oxidase, N2-terminal
IPR015800
Copper amine oxidase, N2-terminal Domain 74 (289) No
Copper amine oxidase, N2/N3-terminal
IPR015801
Copper amine oxidase, N2/N3-terminal Domain 80 (314) No
Copper amine oxidase, N3-terminal
IPR015802
Copper amine oxidase, N3-terminal Domain 76 (297) No
Copper amine oxidase, N-terminal
IPR016182
Copper amine oxidase, N-terminal Domain 80 (313) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR015801 IPR016182 IPR015802 IPR015798 IPR015800


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
392 333 (85%) 248 (63%) [54; 662; 1411] ~580 3667 448