Family GP000647


Family ID GP000647  add to my list RDF
Family name Nucleotide-diphospho-sugar transferase family   suggest a name
Comment
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Nucleotide-diphospho-sugar transferase family (plant-specificity: 9%)
GP000647 (391)
2 GP015617 (391)
3 GP040282 (391)
4 GP069735 (391)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 391
Species Count (w/o splice) Count (w/ splice)
5 7
3 3
32 32
5 5
16 16
16 16
7 7
7 7
13 14
20 20
16 16
23 23
20 28
16 17
10 10
6 6
5 5
5 5
9 11
5 5
8 8
5 7
4 4
11 15
7 7
5 5
4 4
15 15
10 10
14 14
4 4
9 10
17 22
13 13


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Nucleotide-diphospho-sugar transferase
IPR005069
Nucleotide-diphospho-sugar transferase Family 93 (364) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005069


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
391 365 (93%) 326 (83%) [70; 347; 1275] ~322 3012 235




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Species



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