Family GP002578


Family ID GP002578  add to my list RDF
Family name SNF7 family 2   suggest a name
Synonym(s) Vacuolar protein sorting-associated, VPS2, VPS24
Cross-reference(s) PMID:
The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis.
17090720 PMID:
Exploring the ESCRTing machinery in eukaryotes.
16488176
Comment See also SNF7 family 1 (Family id: 21404)
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
SNF7 family 2
GP002578 (388)
2
SNF7 family
GP016482 (220) ,
SNF7 family
GP018467 (85) ,
SNF7 family
GP018761 (83)
3 GP042610 (220) , GP043168 (82) , GP043523 (83) , GP128280 (3)
4 GP072121 (111) , GP072706 (108) , GP073035 (83) , GP072674 (82) , GP144495 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 388
Species Count (w/o splice) Count (w/ splice)
3 3
4 4
20 20
12 15
6 6
9 9
6 6
11 11
10 10
13 13
14 14
8 11
7 9
5 5
7 7
9 19
7 7
6 6
9 9
11 11
5 5
7 9
7 7
9 9
12 38
6 6
11 22
6 6
13 13
6 6
18 18
6 6
8 8
7 7
7 7
15 19
7 7


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Snf7
IPR005024
Snf7 Family 88 (343) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005024


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
388 327 (84%) 304 (78%) [53; 213; 1120] ~207 2240 135


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
388 304 (78%) 1.80764 1.65983 0.59792



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Species



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