Family GP001186


Family ID GP001186  add to my list RDF
Family name DDT domain containing family   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
DDT domain containing family (plant-specificity: 90%)
GP001186 (383)
2 GP016604 (205) , GP018724 (91) ,
(plant-specificity: 100%)
GP021983 (75) ,
(plant-specificity: 100%)
GP111588 (10) ,
(plant-specificity: 100%)
GP112471 (6) , GP114425 (4) , GP115865 (3)
3 GP042121 (150) , GP043480 (91) ,
(plant-specificity: 100%)
GP047137 (75) ,
(plant-specificity: 100%)
GP045872 (55) ,
(plant-specificity: 100%)
GP121020 (10) , GP125873 (4) , GP126311 (4) , GP128324 (3)
4 GP071596 (148) , GP072996 (91) ,
(plant-specificity: 100%)
GP076970 (75) ,
(plant-specificity: 100%)
GP075514 (55) , GP141139 (4) , GP141840 (4) , GP144564 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 383
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
5 5
5 5
7 7
11 11
6 6
10 10
10 10
17 17
12 12
7 10
5 5
7 7
5 5
12 17
9 9
5 5
6 6
6 6
5 5
5 6
7 7
17 17
8 41
5 5
10 28
5 5
7 7
5 9
14 14
10 10
12 12
7 7
7 13
18 32
8 8


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
DDT domain
IPR004022
DDT domain Domain 57 (219) No
DDT domain, subgroup
IPR018500
DDT domain, subgroup Domain 55 (209) No
DDT domain superfamily
IPR018501
DDT domain superfamily Domain 56 (215) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR018501 IPR004022 IPR018500


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
383 299 (78%) 193 (50%) [82; 688; 2257] ~867 4416 319