Family GP000899


Family ID GP000899  add to my list RDF
Family name Alpha-amylase family   suggest a name
Synonym(s) Alpha-amylase isozyme
Cross-reference(s) PMID:
Characterization of an alpha-amylase multigene cluster in rice.
1714318 PMID:
Structural organization and differential expression of rice alpha-amylase genes.
2263460
Family Ontology
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molecular_function
cation binding
GO:0043169 (66%) - cation binding
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Alpha-amylase family (plant-specificity: 19%)
GP000899 (383)
2
Alpha-amylase family
GP015819 (383)
3 GP040515 (383)
4 GP070894 (370) ,
(plant-specificity: 100%)
GP134999 (10) , GP145691 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 383
Species Count (w/o splice) Count (w/ splice)
5 5
46 46
7 11
5 5
21 21
4 4
14 14
12 12
9 9
7 7
10 16
5 7
5 5
16 16
7 9
11 12
4 4
4 4
5 5
8 8
3 3
5 5
15 15
7 22
6 6
5 20
5 5
11 11
5 7
12 12
10 10
14 15
7 7
5 5
9 13
7 7


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Alpha amylase
IPR006046
Alpha amylase Family 40 (152) Yes
Alpha-amylase, plant
IPR013775
Alpha-amylase, plant Family 29 (112) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Glycosyl hydrolase, family 13, catalytic domain
IPR006047
Glycosyl hydrolase, family 13, catalytic domain Domain 73 (280) No
Glycosyl hydrolase, family 13, subfamily, catalytic domain
IPR006589
Glycosyl hydrolase, family 13, subfamily, catalytic domain Domain 66 (252) No
Alpha-amylase, C-terminal beta-sheet
IPR012850
Alpha-amylase, C-terminal beta-sheet Domain 69 (265) No
Glycosyl hydrolase, family 13, all-beta
IPR013780
Glycosyl hydrolase, family 13, all-beta Domain 69 (265) No
Glycoside hydrolase, catalytic domain
IPR013781
Glycoside hydrolase, catalytic domain Domain 80 (308) No
Glycoside hydrolase, superfamily
IPR017853
Glycoside hydrolase, superfamily Domain 80 (308) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013781 IPR017853 IPR006047 IPR013780 IPR006046 IPR012850 IPR006589


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
383 330 (86%) 264 (69%) [24; 426; 3003] ~504 5603 344