Family GP000716


Family ID GP000716  add to my list RDF
Family name Prenylated rab acceptor family (PRA1)   suggest a name
Synonym(s) PRA1
Cross-reference(s) PMID:
The PRA1 gene family in Arabidopsis.
18583532
Family Ontology
Close Hide
molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Prenylated rab acceptor family (PRA1) (plant-specificity: 30%)
GP000716 (381)
2 GP015597 (341) ,
(plant-specificity: 100%)
GP024272 (38)
3 GP040292 (341) ,
(plant-specificity: 100%)
GP049947 (25) ,
(plant-specificity: 100%)
GP122979 (9) , GP126438 (4)
4
(plant-specificity: 30%)
GP132241 (189) , GP081051 (152) ,
(plant-specificity: 100%)
GP080330 (25) ,
(plant-specificity: 100%)
GP135671 (9) , GP142015 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 381
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
2 2
4 7
1 1
12 12
5 5
9 9
14 14
13 13
2 2
10 11
9 10
8 8
11 11
11 13
10 11
9 9
10 10
9 9
16 17
8 8
7 7
15 16
10 10
16 17
9 9
11 11
9 9
26 26
5 5
18 18
12 12
13 14
28 31
11 11


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Prenylated rab acceptor PRA1
IPR004895
Prenylated rab acceptor PRA1 Family 95 (361) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004895


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
381 366 (96%) 349 (92%) [58; 200; 782] ~198 1575 140


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
381 349 (92%) 1.00254 0.925408 0.340231



for (default: all):
Species



(click on the button above to get your homolog prediction list)