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Family GP000803


Family ID GP000803  add to my list RDF
Family name Clathrin adaptor, mu subunit family 1   suggest a name
Cross-reference(s) PMID:
COP and clathrin-coated vesicle budding: different pathways, common approaches.
15261670
Family Ontology
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cellular_component
clathrin adaptor complex
GO:0030131 (54%) - clathrin adaptor complex
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Clathrin adaptor, mu subunit family 1 (plant-specificity: 9%)
GP000803 (378)
2 GP016001 (376)
3 GP040668 (300) , GP043440 (76)
4 GP070394 (206) , GP073807 (93) , GP072954 (76)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 378
Species Count (w/o splice) Count (w/ splice)
2 2
3 3
42 42
6 9
4 4
13 13
4 4
11 11
7 7
12 12
7 7
6 9
5 6
5 5
4 4
13 21
4 4
4 4
5 5
9 9
9 9
5 8
5 5
20 20
8 22
6 6
7 16
7 7
9 9
4 7
19 19
9 9
9 10
6 6
7 8
17 25
11 11


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Clathrin adaptor, mu subunit
IPR001392
Clathrin adaptor, mu subunit Family 80 (304) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Clathrin adaptor, mu subunit, C-terminal
IPR008968
Clathrin adaptor, mu subunit, C-terminal Domain 88 (334) No
Longin-like domain
IPR011012
Longin-like domain Domain 76 (289) No
Clathrin adaptor, mu subunit, conserved site
IPR018240
Clathrin adaptor, mu subunit, conserved site Conserved_site 55 (206) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011012 IPR008968 IPR018240 IPR001392


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
378 324 (86%) 275 (73%) [46; 422; 1096] ~379 2380 236