Family GP001071


Family ID GP001071  add to my list RDF
Family name Ribosomal protein S4a/S4e family   suggest a name
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ribosomal protein S4a/S4e family (plant-specificity: 30%)
GP001071 (377)
2
Ribosomal protein S4e
GP016048 (250) , GP016344 (127)
3 GP040711 (250) , GP040969 (127)
4 GP070140 (247) , GP071010 (127)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 377
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
28 28
12 15
2 2
8 8
3 3
8 8
6 6
7 7
7 7
5 5
4 5
4 4
5 5
47 66
7 7
6 6
5 5
10 10
5 5
5 8
4 4
14 14
13 33
6 6
9 15
4 4
16 16
6 11
18 18
3 3
7 7
6 6
6 8
12 12
6 6


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein S4e
IPR000876
Ribosomal protein S4e Family 32 (120) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000876
Ribosomal protein S4e, central region
IPR013845
Ribosomal protein S4e, N-terminal, conserved site
IPR018199
Ribosomal protein S4e, N-terminal
IPR013843



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
377 318 (84%) 191 (51%) [39; 184; 877] ~185 2155 181