Family GP000695


Family ID GP000695  add to my list RDF
Family name Methionine adenosyltransferase family   suggest a name
Synonym(s) S-adenosyl-l-methionine synthetase , s-adenosylmethionine synthetase
Family Ontology
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molecular_function
methionine adenosyltransferase activity
GO:0004478 (64%) - methionine adenosyltransferase activity
biological_process
S-adenosylmethionine biosynthetic process
GO:0006556 (64%) - S-adenosylmethionine biosynthetic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Methionine adenosyltransferase family (plant-specificity: 50%)
GP000695 (377)
2 GP015958 (262) , GP017598 (98) ,
(plant-specificity: 100%)
GP110533 (13) ,
(plant-specificity: 100%)
GP111638 (12)
3 GP040592 (262) , GP042257 (98) ,
(plant-specificity: 100%)
GP120603 (13) ,
(plant-specificity: 100%)
GP120793 (12)
4 GP070037 (262) , GP071686 (98) ,
(plant-specificity: 100%)
GP134147 (13) ,
(plant-specificity: 100%)
GP134399 (12)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 377
Species Count (w/o splice) Count (w/ splice)
2 2
5 5
10 10
6 7
6 6
14 14
3 3
18 18
11 11
6 6
6 6
30 35
6 6
8 8
6 6
10 19
5 6
5 5
5 5
6 6
6 6
6 10
5 5
13 13
12 28
6 6
13 22
7 7
12 12
3 6
21 21
6 6
5 5
6 6
11 13
16 18
9 9


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
S-adenosylmethionine synthetase
IPR002133
S-adenosylmethionine synthetase Family 54 (205) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
S-adenosylmethionine synthetase, N-terminal
IPR022628
S-adenosylmethionine synthetase, N-terminal Domain 59 (224) No
S-adenosylmethionine synthetase, central domain
IPR022629
S-adenosylmethionine synthetase, central domain Domain 59 (224) No
S-adenosylmethionine synthetase, C-terminal
IPR022630
S-adenosylmethionine synthetase, C-terminal Domain 60 (225) No
S-adenosylmethionine synthetase, conserved site
IPR022631
S-adenosylmethionine synthetase, conserved site Conserved_site 58 (218) No
S-adenosylmethionine synthetase superfamily
IPR022636
S-adenosylmethionine synthetase superfamily Domain 64 (242) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR022631 IPR002133 IPR022628 IPR022629 IPR022630 IPR022636


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
377 325 (86%) 262 (69%) [20; 394; 1253] ~431 3093 195