Family GP000118


Family ID GP000118  add to my list RDF
Family name AMP-dependent synthetase/ligase superfamily   suggest a name
Cross-reference(s) PMID:
Protein sequence homology between plant 4-coumarate:CoA ligase and firefly luciferase.
2911486
Family Ontology
Close Hide
molecular_function
acetate-CoA ligase activity
GO:0003987 (4%) - acetate-CoA ligase activity
AMP binding
GO:0016208 (4%) - AMP binding
phosphopantetheine binding
GO:0031177 (1%) - phosphopantetheine binding
biological_process
acetyl-CoA biosynthetic process from acetate
GO:0019427 (4%) - acetyl-CoA biosynthetic process from acetate
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
AMP-dependent synthetase/ligase superfamily
GP000118 (2082)
2
4-coumarate CoA ligase family
GP015200 (1050) , GP015392 (515) ,
Acetyl-CoA synthetase family
GP017464 (170) ,
Acetate--CoA ligase family
GP017306 (140) , GP109011 (1) ,
AMP-dependent synthetase/ligase with catalase, N-terminal domain group
GP018476 (89) ,
(plant-specificity: 11%)
GP018934 (77) ,
(plant-specificity: 80%)
GP110408 (14) ,
(plant-specificity: 100%)
GP110678 (14) ,
(plant-specificity: 100%)
GP111588 (10) ,
(plant-specificity: 100%)
GP026107 (7) , GP116239 (4) , GP116275 (4) , GP117338 (3)
3 GP040162 (783) , GP040056 (515) , GP042127 (170) , GP042090 (140) , GP118813 (1) , GP042743 (107) , GP043663 (98) , GP043714 (77) , GP046264 (59) , GP047042 (52) ,
(plant-specificity: 11%)
GP047601 (37) ,
(plant-specificity: 80%)
GP120144 (14) ,
(plant-specificity: 100%)
GP120433 (14) ,
(plant-specificity: 100%)
GP121020 (10) ,
(plant-specificity: 97%)
GP122197 (8) , GP126329 (4) , GP128176 (4) , GP128984 (4) , GP130507 (3)
4 GP069619 (552) , GP069550 (515) , GP069980 (227) , GP071554 (169) , GP071514 (140) , GP072222 (107) , GP073168 (98) , GP073219 (77) , GP075956 (59) , GP076855 (52) ,
(plant-specificity: 11%)
GP077474 (37) ,
(plant-specificity: 100%)
GP133928 (14) ,
(plant-specificity: 80%)
GP133932 (14) , GP085871 (4) , GP141842 (4) , GP141862 (4) , GP147590 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 2082
Species Count (w/o splice) Count (w/ splice)
3 3
10 10
95 95
24 36
55 55
149 149
39 39
49 49
44 44
63 63
47 47
37 49
35 39
39 39
49 49
39 75
42 44
42 42
39 39
51 51
33 33
34 42
35 35
80 80
43 106
36 36
64 118
60 60
46 46
35 47
95 95
66 66
65 66
41 41
37 43
77 108
43 43


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Protein of unknown function DUF485
IPR007436
Protein of unknown function DUF485 Family 1 (1) Yes
Acetate-CoA ligase
IPR011904
Acetate-CoA ligase Family 4 (84) Yes
Benzoate-CoA ligase family
IPR011957
Benzoate-CoA ligase family Family 1 (1) Yes
Dicarboxylate-CoA ligase PimA
IPR017618
Dicarboxylate-CoA ligase PimA Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
AMP-dependent synthetase/ligase
IPR000873
AMP-dependent synthetase/ligase Domain 86 (1793) No
AMP-binding, conserved site
IPR020845
AMP-binding, conserved site Conserved_site 64 (1322) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000873 IPR020845
AMP-binding enzyme C-terminal domain
IPR025110



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)