Family GP000492


Family ID GP000492  add to my list RDF
Family name Glutathione peroxidase family   suggest a name
Cross-reference(s) PMID:
Glutathione peroxidase genes in Arabidopsis are ubiquitous and regulated by abiotic stresses through diverse signaling pathways.
14617062 PMID:
An Arabidopsis glutathione peroxidase functions as both a redox transducer and a scavenger in abscisic acid and drought stress responses.
16998070
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Glutathione peroxidase family (plant-specificity: 9%)
GP000492 (369)
2 GP015712 (367)
3 GP040371 (357) ,
(plant-specificity: 30%)
GP122177 (10)
4 GP069812 (349) ,
(plant-specificity: 30%)
GP135031 (10) , GP136289 (8)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 369
Species Count (w/o splice) Count (w/ splice)
6 6
40 40
4 5
5 5
21 21
6 6
8 8
7 7
8 8
6 6
5 8
5 10
5 5
7 7
7 13
7 8
6 6
5 5
7 7
5 5
8 9
6 6
16 16
8 23
5 5
8 15
4 4
6 6
9 13
19 19
8 8
7 11
6 6
8 8
17 27
7 7


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Glutathione peroxidase
IPR000889
Glutathione peroxidase Family 92 (340) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Thioredoxin-like fold
IPR012336
Thioredoxin-like fold Domain 94 (345) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR012336 IPR000889


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
369 311 (84%) 290 (79%) [40; 172; 1252] ~189 2607 157


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
369 290 (79%) 1.11247 0.788103 0.608711



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