Family GP000856


Family ID GP000856  add to my list RDF
Family name Poly(A) polymerase family   suggest a name
Synonym(s) Nucleotidyltransferase
Family Ontology
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molecular_function
polynucleotide adenylyltransferase activity
GO:0004652 (56%) - polynucleotide adenylyltransferase activity
protein binding
GO:0005515 (1%) - protein binding
biological_process
RNA 3'-end processing
GO:0031123 (85%) - RNA 3'-end processing
RNA polyadenylation
GO:0043631 (56%) - RNA polyadenylation
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Poly(A) polymerase family (plant-specificity: 19%)
GP000856 (368)
2 GP015770 (363) ,
(plant-specificity: 100%)
GP027211 (5)
3 GP040418 (363) ,
(plant-specificity: 100%)
GP053766 (5)
4 GP069863 (363) ,
(plant-specificity: 100%)
GP085144 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 368
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
9 9
2 2
2 2
8 8
2 2
6 6
5 5
9 9
8 8
14 19
7 15
5 5
7 7
9 21
7 7
4 4
5 5
7 7
5 5
5 18
5 5
36 36
8 32
6 6
5 16
4 4
14 14
7 7
15 15
9 9
3 3
13 13
6 12
9 25
5 5


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Poly(A) polymerase
IPR014492
Poly(A) polymerase Family 56 (205) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Nucleotidyl transferase domain
IPR002934
Nucleotidyl transferase domain Domain 69 (254) No
Poly(A) polymerase, RNA-binding domain
IPR007010
Poly(A) polymerase, RNA-binding domain Domain 84 (309) No
Poly(A) polymerase, central domain
IPR007012
Poly(A) polymerase, central domain Domain 92 (337) No
Nucleotidyltransferase, class I, C-terminal-like
IPR011068
Nucleotidyltransferase, class I, C-terminal-like Domain 85 (311) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR007012 IPR002934 IPR011068 IPR007010 IPR014492


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
368 273 (74%) 223 (61%) [64; 665; 1088] ~589 2059 465