Family GP000680


Family ID GP000680  add to my list RDF
Family name Membrane attack complex component/perforin/complement c9 family   suggest a name
Synonym(s) MAC - Perforin - MACPF
Cross-reference(s) PMID:
Loss of Necrotic Spotted Lesions 1 associates with cell death and defense responses in Arabidopsis thaliana.
16900325
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Membrane attack complex component/perforin/complement c9 family (plant-specificity: 80%)
GP000680 (370)
2 GP015603 (366) , GP026657 (4)
3 GP040273 (366) , GP053093 (4)
4 GP069728 (366) , GP084376 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 370
Species Count (w/o splice) Count (w/ splice)
2 3
2 2
6 6
8 8
12 12
9 9
14 14
12 12
7 11
7 11
7 7
7 7
10 17
7 7
8 8
8 8
8 8
7 7
4 5
7 7
9 9
16 23
10 10
14 28
7 7
15 15
6 9
21 21
8 8
14 15
9 9
9 10
20 26
11 11


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Membrane attack complex component/perforin (MACPF) domain
IPR020864
Membrane attack complex component/perforin (MACPF) domain Domain 87 (321) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR020864


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
370 321 (87%) 279 (75%) [72; 588; 1252] ~519 3047 464




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