Family GP000759


Family ID GP000759  add to my list RDF
Family name Proteinase Inhibitor I4, Serpin Family   suggest a name
Cross-reference(s) PMID:
Serpins in plants and green algae.
18060440 PMID:
Serpin1 of Arabidopsis thaliana is a suicide inhibitor for metacaspase 9.
17028019
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Proteinase Inhibitor I4, Serpin Family
GP000759 (366)
2
Proteinase inhibitor I4, serpin family
GP015665 (366)
3 GP040341 (366)
4 GP069785 (366)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 366
Species Count (w/o splice) Count (w/ splice)
1 1
5 11
1 1
2 2
1 1
2 2
2 2
2 2
1 1
24 24
24 24
12 12
22 22
5 6
18 18
4 4
9 9
8 8
1 1
13 14
3 3
4 4
3 3
3 3
8 9
6 6
3 3
4 4
40 40
75 75
43 43
4 4
1 1
2 2
1 1


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Serpin, conserved site
IPR023795
Serpin, conserved site Conserved_site 56 (204) No
Serpin domain
IPR023796
Serpin domain Domain 96 (351) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR023796 IPR023795


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
366 357 (98%) 279 (76%) [55; 386; 1318] ~337 4117 298