Family GP000704


Family ID GP000704  add to my list RDF
Family name Dynein light chain type 1 and 2 family   suggest a name
Cross-reference(s) PMID:
The M(r) = 8,000 and 11,000 outer arm dynein light chains from Chlamydomonas flagella have cytoplasmic homologues.
7744782
Family Ontology
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cellular_component
microtubule associated complex
GO:0005875 (12%) - microtubule associated complex
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Dynein light chain type 1 and 2 family (plant-specificity: 9%)
GP000704 (366)
2 GP015609 (359) ,
(plant-specificity: 100%)
GP029708 (5)
3 GP040464 (359) ,
(plant-specificity: 100%)
GP057119 (5)
4 GP071290 (149) , GP072138 (123) , GP073442 (71) ,
(plant-specificity: 28%)
GP135385 (9) ,
(plant-specificity: 100%)
GP089576 (5) , GP141044 (4) , GP144179 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 366
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
7 7
5 5
4 4
7 7
7 7
14 14
9 9
9 9
4 4
8 9
7 7
4 4
8 8
10 11
9 9
8 8
9 9
9 9
10 10
6 6
9 9
10 10
17 23
13 13
13 19
9 9
16 16
9 11
17 17
6 6
10 11
11 11
10 11
23 26
14 14


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Dynein light chain, type 1/2
IPR001372
Dynein light chain, type 1/2 Family 90 (329) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001372


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
366 345 (94%) 336 (92%) [60; 119; 421] ~139 1054 71


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
366 336 (92%) 2.13361 2.33662 0.768291



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Species



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