Family GP000994


Family ID GP000994  add to my list RDF
Family name Zinc finger, lateral root primordium type 1 family   suggest a name
Synonym(s) Unknown function duf702
Cross-reference(s) PMID:
LRP1, a gene expressed in lateral and adventitious root primordia of arabidopsis.
7647564
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Zinc finger, lateral root primordium type 1 family (plant-specificity: 94%)
GP000994 (365)
2 GP015935 (286) ,
(plant-specificity: 50%)
GP019489 (79)
3 GP040588 (286) , GP044560 (79)
4 GP070618 (286) , GP074130 (79)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 365
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
3 4
8 8
2 2
5 5
11 11
9 9
9 9
3 3
6 7
5 6
7 7
8 8
11 16
7 9
5 5
8 8
9 9
6 6
11 19
6 6
13 13
14 32
5 5
12 27
6 6
13 13
9 11
10 10
10 10
13 13
7 7
11 14
22 34
11 11


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Protein of unknown function DUF702
IPR007818
Protein of unknown function DUF702 Family 75 (273) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Zinc finger, lateral root primordium type 1
IPR006510 IPR007818
Lateral Root Primordium type 1, C-terminal
IPR006511



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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
365 297 (81%) 271 (74%) [55; 318; 605] ~293 1820 119




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