Family GP000811


Family ID GP000811  add to my list RDF
Family name Radical-Induced Cell Death Homolog Family   suggest a name
Synonym(s) Ceo rcd1 ros similar to rcd-one family (sro)
Cross-reference(s) PMID:
Nitric oxide modulates ozone-induced cell death, hormone biosynthesis and gene expression in Arabidopsis thaliana.
19054359 PMID:
Overexpression of the RADICAL-INDUCED CELL DEATH1 (RCD1) gene of Arabidopsis causes weak rcd1 phenotype with compromised oxidative-stress responses.
16926493
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Radical-Induced Cell Death Homolog Family (plant-specificity: 92%)
GP000811 (364)
2 GP015723 (358) ,
(plant-specificity: 80%)
GP109052 (86) ,
(plant-specificity: 100%)
GP109605 (25)
3 GP040495 (354) ,
(plant-specificity: 80%)
GP118909 (73) ,
(plant-specificity: 100%)
GP119450 (25)
4 GP070627 (353) ,
(plant-specificity: 80%)
GP132507 (52) ,
(plant-specificity: 100%)
GP132924 (25)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 364
Species Count (w/o splice) Count (w/ splice)
6 6
3 5
2 2
9 9
5 5
11 11
11 11
9 9
7 7
5 19
7 17
5 5
7 7
6 16
5 6
4 4
10 10
14 14
5 5
6 9
4 4
7 7
7 30
6 6
10 23
5 5
12 12
4 14
10 10
31 31
14 14
6 6
5 7
9 15
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Poly(ADP-ribose) polymerase, catalytic domain
IPR012317
Poly(ADP-ribose) polymerase, catalytic domain Domain 79 (289) No
RST domain of plant C-terminal
IPR022003
RST domain of plant C-terminal Domain 66 (241) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR012317 IPR022003


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
364 270 (74%) 219 (60%) [55; 452; 3381] ~466 3704 206