Family GP082827


Family ID GP082827  add to my list RDF
Family name Unannotated cluster   suggest a name
Curation status ?
Found in Magnoliophyta
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
MADS transcription factor family (plant-specificity: 60%)
GP000028 (4022)
2
MIKC subfamily
GP015070 (3183) ,
Mgamma-I subfamily
GP015494 (458) ,
(plant-specificity: 92%)
GP109173 (66) ,
(plant-specificity: 97%)
GP025797 (33)
3 GP039797 (2454) , GP040184 (420) ,
(plant-specificity: 100%)
GP049052 (58) ,
(plant-specificity: 85%)
GP120247 (15)
4
(plant-specificity: 63%)
GP082827 (40)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 40
Species Count (w/o splice) Count (w/ splice)
3 3
1 1
1 1
1 1
1 1
2 2
1 1
1 1
4 4
2 2
2 2
1 1
2 2
2 2
1 1
2 2
5 5
2 2
1 1
3 3
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Transcription factor, MADS-box
IPR002100
Transcription factor, MADS-box Domain 98 (39) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002100


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Species
Information to display
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