Family GP007743


Family ID GP007743  add to my list RDF
Family name HCaRG hypertension-related, calcium-regulated family   suggest a name
Cross-reference(s) PMID:
HCaRG, a novel calcium-regulated gene coding for a nuclear protein, is potentially involved in the regulation of cell proliferation.
10918053
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
HCaRG hypertension-related, calcium-regulated family (plant-specificity: 16%)
GP007743 (6)
2
(plant-specificity: 16%)
GP028865 (6)
3
(plant-specificity: 16%)
GP055878 (6)
4
(plant-specificity: 16%)
GP087784 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 6
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
2 2
1 1
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
HCaRG
IPR009886
HCaRG Family 83 (5) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR009886


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
6 6 (100%) 5 (83%) [64; 245; 256] ~204 375 149