Family GP000734


Family ID GP000734  add to my list RDF
Family name Carbonic anhydrase family   suggest a name
Cross-reference(s) PMID:
Subunit constitution of carbonic anhydrase from Chlamydomonas reinhardtii.
2120056 PMID:
Structural analysis of periplasmic carbonic anhydrase 1 of Chlamydomonas reinhardtii.
8508810 PMID:
Characterization of carbonic anhydrase isozyme CA2, which is the CAH2 gene product, in Chlamydomonas reinhardtii.
1368343 PMID:
A novel alpha-type carbonic anhydrase associated with the thylakoid membrane in Chlamydomonas reinhardtii is required for growth at ambient CO2.
9482718
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Carbonic anhydrase family
GP000734 (358)
2 GP015662 (354)
3 GP040314 (354)
4 GP069767 (348) , GP088099 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 358
Species Count (w/o splice) Count (w/ splice)
2 2
3 3
10 10
22 22
15 15
15 15
10 10
8 8
8 8
4 4
13 15
5 7
9 9
8 8
8 22
12 12
6 6
5 5
8 8
5 5
8 9
7 7
5 5
10 18
7 7
8 9
9 9
10 10
12 14
10 10
8 8
15 15
6 6
8 9
15 19
9 9


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Alpha carbonic anhydrase
IPR001148
Alpha carbonic anhydrase Domain 97 (347) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001148


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
358 323 (90%) 280 (78%) [55; 271; 623] ~244 1419 189




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