Family GP000727


Family ID GP000727  add to my list RDF
Family name Aig1 domain containing protein family   suggest a name
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
cellular_component
chloroplast outer membrane
GO:0009707 (20%) - chloroplast outer membrane
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Aig1 domain containing protein family (plant-specificity: 70%)
GP000727 (353)
2
Chloroplast protein import component subfamily
GP015722 (343) ,
(plant-specificity: 100%)
GP112256 (7) , GP116482 (3)
3 GP040805 (234) , GP042507 (109) ,
(plant-specificity: 100%)
GP123132 (7) , GP129358 (3)
4 GP070233 (234) , GP071905 (109) ,
(plant-specificity: 100%)
GP137371 (7) , GP146140 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 353
Species Count (w/o splice) Count (w/ splice)
2 2
4 4
8 8
7 8
3 3
11 11
5 5
9 9
9 9
9 9
8 8
9 11
6 6
5 5
6 6
9 14
5 7
5 5
7 7
9 9
6 6
8 13
5 5
19 19
11 29
5 5
16 29
8 8
14 14
4 5
14 14
6 6
9 11
13 13
5 5
10 20
5 5


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Chloroplast protein import component Toc34
IPR005688
Chloroplast protein import component Toc34 Family 20 (71) Yes
Chloroplast protein import component Toc86/159
IPR005690
Chloroplast protein import component Toc86/159 Family 45 (159) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
AIG1
IPR006703
AIG1 Domain 84 (295) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006703
Domain of unknown function DUF3406, chloroplast translocase
IPR024283 IPR005690



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
353 293 (83%) 171 (48%) [41; 769; 5436] ~736 6300 524